Hello Fishbros!
Restore logs can be found in /opt/zimbra/log/, and there you can find the item IDs of all items restored in the second pass and thus duplicated with
Code:
cat /opt/zimbra/log/zextras_ZxBackup_ExternalRestore_OPERATIONID | grep -i "Adding Item" | awk {'print $8'}
(this is just a basic search, make sure to manually check the items returned or crosscheck those with the logs of the first restore)
You can then remove those using zmmailbox if needed, but if the original maps have been deleted there is no way to reprise an incremental migration...
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