Hi novastram and welcome to our forum.
First of all, the mailbox counter is recalculated every 15 minute but you can force the check with a simple CLI command as zimbra user:
Code:
zxsuite core doLicenseChecks
Pay attention to the account type you have removed, only a normal user account is relevant, if you have removed a system resource mailbox (or an external one) it doesn't matter.
If your issue persists, please report all relevant information about your enviroment as reported in our guide: How to report a ZeXtras Suite issue.
Have a nice day.
D0s0n
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